some output from asr file
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some output from asr file
Hi,
While I analysed sheep weaning weight data using asreml, I've getten some
output that confused me.
First, the description of the data is showed as
Model term Size Type COL Minimum Mean Maximum #
zero #miss
1 animal 398 Direct 1 3.0000 204.47 398.00
0. 0
2 sire 1 Covariate 2 1.0000 31311. 94087.
0. 2
3 dam 1 Covariate 3 90002. 92419. 94288.
0. 0
4 sex 2 Factor 4 1.0000 1.5314 2.0000
0. 0
5 brrank 3 Factor 5 1.0000 1.5990 3.0000
0. 0
......
9 genotype 5 Factor 9 1.0000 3.4734 5.0000
0. 0
......
14 wwt 1 Variate 14 10.900 22.447 34.200
0. 0
......
21 mu 1 Constant Term
Following is the as file
Lamb fec and weight data from mating97 FEC -6/3, wt birth-6/3
animal !P
sire
dam
sex 2
brrank 3
sire_gd
ewegd
sirebd
genotype 5
lambplot
bage
wage
bwt
wwt
wt4298
wt6398
FEC181297
Nem181297
FEC6398
nem6398
#97002 94087 93193 2 2 0 0 1 4 11 94 2.6 19.5 21.7 20.8 4 3 3 0
wt_fec.txt
wt_fec.txt
wwt ~mu sex genotype !r animal !f brrank
The output in asr file is :
Forming 410 equations: 9 dense
NOTICE: 3 (more) singularities,
LogL=-331.254 S2= 8.292 199 df 0.10000 0.00000 1.00000
LogL=-331.012 S2= 7.681 199 df 0.20413 0.00000 1.00000
LogL=-329.910 S2= 5.400 199 df 0.81331 0.00000 1.00000
LogL=-327.708 S2= 1.568 199 df 5.89486 0.00000 1.00000
LogL=-326.870 S2= 0.1704 199 df 64.84345 0.00000 1.00000
LogL=-326.777 S2= 0.1577E-01 199 df 713.27793 0.00000 1.00000
LogL=-326.768 S2= 0.1436E-02 199 df7846.05719 0.00000 1.00000
Final parameter values 7846.12527 0.00000 1.00000
WARNING: 1 singularities in AI matrix.
Source Model terms Gamma Component Compnt/StndErr
animal 398 398 7846.13 11.2667 9.97
Variance 207 199 1.00000 0.143596E-02 0.00
Solution Standard Error T-value T-prev
9 genotype 4 5.16 5.16 [ DF F_inc F_all ]
2 -1.96544 1.87758 -1.05
3 -3.62408 2.28853 -1.58 -0.72
4 4.42244 1.71869 2.57 3.65
5 4.42008 1.74527 2.53 0.00
4 sex 1 3.83 3.99 [ DF F_inc F_all ]
7 -0.834937 0.417911 -2.00
1 animal 398 effects fitted
5 brrank 3 effects fitted
Finished: 22:37:03.03 LogL Converged
And mu in sln file is 0.
Can some one explain the results for me?
Thanks
Yuandan
************************************************************************
Yuandan Zhang
Department of Animal Science
University of New England
Armidale, NSW 2351, Australia
Phone +61 + 2 + 6773 2756(Lab)
Fax +61 + 2 + 6773 3275
E-mail yzhang@metz.une.edu.au
homepage http://metz.une.edu.au/~yzhang/
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