Re: Problem with a second .grm file

From: Arthur Gilmour <arthur.gilmour_at_CARGOVALE.COM.AU>
Date: Wed, 28 Oct 2009 09:50:49 +1100

Dear Marcelo,

1) Let's try something simple first.

  Increase the WORKSPACE
i.e. insert a new line at the top of the .as file which says (say)

  !WORKSPACE 200

and rerun the job.

2) If that results in it failing at exactly the same point,
it suggests a problem with the file. But you could swap the order of
the .grm files and see whether that makes a difference.

3) Third option is to use ASReml 3 (from
http://www.austatgen.org/asreml3alpha.php
if not available yet from VSN)

4) If all else fails, send me (arthur.gilmour_at_cargovale.com.au) the job
(all data, as ped and grm files)

On Tue, 2009-10-27 at 13:28 +0000, Marcelo Viana wrote:
> My problem is that ASReml cannot read a second .grm file (associated
> with dominance effect). The message is in the output bellow. There is
> no problem with the file since it is read when I define it as the A
> matrix (associated with the pedigree). The file is equivalent to a
> matrix of 1535 x 1535 (see ASReml code bellow). When the file has
> fewer dimensions it is read without problem (791 x 791). Thanks.
>
> ASReml 2.00a [01 Jul 2006] BLUP analysis, half- and full-sib families
> cycles 1 and 2
>
> Build: v [27 Feb 2007] 32 bit
>
> 26 Oct 2009 20:38:30.437 32.00 Mbyte Windows rphsfsc12

-- 
Best Wishes,
Arthur Gilmour
Adjunct Professor
School of Computing and Mathematics
Charles Sturt University
Jesus went to the synagogue in every town in Galilee to preach and drive
out demons.
A leper came, knelt down and said, "If you will, you can make me clean".
Jesus was moved. He reached out and touched him and said 
"I am willing.  Be clean." He was cleansed immediately.
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Received on Thu Oct 28 2009 - 09:50:49 EST

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