Problem with a second .grm file

From: Marcelo Viana <asremlforum_at_VSNI.CO.UK>
Date: Tue, 27 Oct 2009 13:28:42 +0000

Hello:
 
My problem is that ASReml cannot read a second .grm file (associated with dominance effect). The message is in the output bellow. There is no problem with the file since it is read when I define it as the A matrix (associated with the pedigree). The file is equivalent to a matrix of 1535 x 1535 (see ASReml code bellow). When the file has fewer dimensions it is read without problem (791 x 791). Thanks.
 
ASReml 2.00a [01 Jul 2006] BLUP analysis, half- and full-sib families cycles 1 and 2

Build: v [27 Feb 2007] 32 bit

26 Oct 2009 20:38:30.437 32.00 Mbyte Windows rphsfsc12

Licensed to: Universidade Federal de Viçosa

***********************************************************

* SYNTAX change: A/B now means A A.B *

* *

* Contact support_at_asreml.co.uk for licensing and support *

***************************************************** ARG *

Folder: C:\Documents and Settings\José Marcelo\Meus documentos\My ASReml Files

a 1535 !p

Reading pedigree file rphsfsc12ped.txt : skipping 0 lines

Using an adapted version of Meuwissen & Luo GSE 1992 305-313: Specify !METHOD 1 for column method.

PEDIGREE [rphsfsc12ped.txt ] has 1595 identities, 3897 Non zero elements

Reading rphsfsc12A.grm skipping 0 header lines

Inverse G structure of 1535 rows obtained by inverting matrix read from rphsfsc12A.grm

Reading rphsfsc12D.grm skipping 0 header lines

After 411778 lines: something wrong reading rphsfsc12D.grm

In row 908 read line 908 0 1.0000

Space use 1187373 1599151 1600000

Fault 0 Error reading rphsfsc12D.grm

Last line read was: rphsfsc12D.grm

Currently defined structures, COLS and LEVELS

1 a 1 -1 0 0 0 0

2 d 1 1535 0 0 0 0

3 pop 1 2 0 0 0 0

4 env 1 4 0 0 0 0

5 ev 1 1 0 0 0 0

6 y 1 1 0 0 0 0

rphsfsc12 rphsfsc12D.grm

6 factors defined [max 500].

0 variance parameters [max1500]. 3 special structures

Last line read was: rphsfsc12D.grm

6 0 -1 0 4000

Finished: 26 Oct 2009 20:38:38.390 Error reading rphsfsc12D.grm

ASReml CODE:
 
BLUP analysis, half- and full-sib families cycles 1 and 2

a 1535 !p

d 1535

pop 2

env 4

ev y

rphsfsc12ped.txt !make

rphsfsc12A.grm

rphsfsc12D.grm

rphsfsc12.asd

!continue

!maxit 30

!ddf

ev ~ mu pop env !r a d

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Received on Wed Oct 27 2009 - 13:28:42 EST

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