Re: ASReml-R in Ubuntu9.04 has same problem as in 'Does ASReml-R work with R-2.9.0?'

Xianming, This seems to have arisen with R2.9 and some flavours of Linux, the environment variable is not "visible" in the R sesion. You could confirm this with the R function "Sys.getenv". I'll investigate as to whether the library dependencies can be eliminated from the licensing software, and hence the need for LD_LIBRARY_PATH. Dave. ________________________________ From: ASReml users discussion group [mailto:ASREML-L_at_DPI.NSW.GOV.AU] On Behalf Of Xianming Wei Sent: Tuesday, 26 May 2009 12:55 PM To: ASREML-L_at_DPI.NSW.GOV.AU Subject: ASReml-R in Ubuntu9.04 has same problem as in 'Does ASReml-R work with R-2.9.0?' Hi all, Has anyone tried to install asreml-R in Ubuntu (9.04)? I got virtually the same problem as described below. Using LD_LIBRARY_PATH=myPath/asreml/libs and then library(asreml, lib.loc='myPath') didn't solve the problem. ASReml stand-alone works fine. ######### > sessionInfo() R version 2.8.1 (2008-12-22) x86_64-pc-linux-gnu locale: LC_CTYPE=en_AU.UTF-8;LC_NUMERIC=C;LC_TIME=en_AU.UTF-8;LC_COLLATE=en_AU.U TF-8;LC_MONETARY=C;LC_MESSAGES=en_AU.UTF-8;LC_PAPER=en_AU.UTF-8;LC_NAME= C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_AU.UTF-8;LC_IDENTIFICATI ON=C attached base packages: [1] stats graphics grDevices utils datasets methods base ############# Regards, Xianming It would appear from my recent experience that R-2.9.0 does something different that is incompatible with the way the asreml package looks for the executable. Code: > require(asreml) Loading required package: asreml Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared library '$Rhome/asreml/libs/asreml-R.so': libirc.so: cannot open shared object file: No such file or directory BSES Limited Disclaimer ________________________________ This email and any files transmitted with it are confidential and intended solely for the person or entity to whom they are addressed. If you are not the intended recipient of this email, you should not read, copy or otherwise use it, or disclose its contents to anyone else.If you received this email in error please notify BSES Limited immediately by return email, destroy all copies of the email, any delete if from your system. Recipients should rely on their own systems for detecting computer viruses or other material that may corrupt files or systems. ________________________________ This message is intended for the addressee named and may contain confidential information. If you are not the intended recipient, please delete it and notify the sender. Views expressed in this message are those of the individual sender, and are not necessarily the views of their organisation. ********************************DISCLAIMER**************************** The information contained in the above e-mail message or messages (which includes any attachments) is confidential and may be legally privileged. It is intended only for the use of the person or entity to which it is addressed. If you are not the addressee any form of disclosure, copying, modification, distribution or any action taken or omitted in reliance on the information is unauthorised. Opinions contained in the message(s) do not necessarily reflect the opinions of the Queensland Government and its authorities. If you received this communication in error, please notify the sender immediately and delete it from your computer system network.
Received on Wed May 26 2009 - 15:09:17 EST