Re: AS-REML for stillbirth
[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]

Re: AS-REML for stillbirth



Thank you very much!  I'll try it.

Mike
> Dear Mike,
> 
> 
> From the information you supply, ASREML can handle the problem for a moderate
> (say < 40,000) calves.  From your description, I presume you will prepare a sire
> pedigree file (which includes all sires and maternal grandsires)
> 
> i.e.  sire.ped  contains 3 fields
> sire sire_of_sire  dam or mgs  
> 
> Assuming I understand the model you want (as there are many possabilities)
> the ASREML job might be something like
> 
> Still birth study
>  calf
>  sire !P
>  mgs !P
>  sex 2     
>  hys  2222    #  where 2222 is number of HYS
>  stillbirth
> sire.ped   !skip 1    # !mgs
> calf.dat
>  
> stillbirth ~ sex !r sire mgs !f hys    # Normal trait
>   or
>    
> stillbirth !bin ~ sex !r sire mgs !f hys # Binomial trait
> 
> 
> 
> I would fit this first, and when you have values for the
> sire and mgs variance components,  extend the model to estimate their 
> covariance by appending
> 
> 0 0 1
> sire 2
> 2 0 US   s-s   s-mgs   mgs-mgs
> sire 0 AINV
> 
> where  s-s is replaced by the sire variance component,
>        s-mgs  by the covariance
>        mgs-mgs by the maternal variance component.
>        
>        
> 
> > X-Authentication-Warning: lamb.chiswick.anprod.csiro.au: petidomo set sender 
> to asreml-owner@ram.chiswick.anprod.csiro.au using -f
> > From: "Mingfeng Luo" <MLUO@aps.uoguelph.ca>
> > To: asreml@ram.chiswick.anprod.csiro.au
> > Date: Wed, 9 Jun 1999 10:33:15 EDT
> > Subject: AS-REML for stillbirth
> > 
> >  I try to estimate the genetic parameters of stillbirth of dairy 
> >  cattle cattle. The model includes the sex effect of calf, HYS as 
> >  random effects, sire and maternal grandsire as random genetic 
> >  effects.
> >  
> >  Can AS-REML this problem?
> >  
> >  Thanks in advance.
> >  
> >  
> >  Mike Luo
> > **********************************
> > *  Mike F. Luo                   *
> > *  Animal & Poultry Science      * 
> > *  Unversity of Guelph           *
> > *  Guelph, ON, N1G 2W1           * 
> > *  Tel: (519)824-4120 X 8354     *         
> > *  Fax: (519)767-0573            * 
> > **********************************                                   
> >               
> > 
> > --
> > Asreml mailinglist archive: http://www.chiswick.anprod.csiro.au/lists/asreml
> 
> 
> <><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><>
> Arthur Gilmour PhD                    mailto:Arthur.Gilmour@agric.nsw.gov.au
> Senior Research Scientist (Biometrics)                 fax: <61> 2 6391 3899
> NSW Agriculture                                             <61> 2 6391 3922
> Orange Agricultural Institute               telephone work: <61> 2 6391 3815
> Forest Rd, ORANGE, 2800, AUSTRALIA                    home: <61> 2 6362 0046
> 
> ASREML is still free by anonymous ftp from pub/aar on ftp.res.bbsrc.ac.uk
>     or point your web browser at ftp://ftp.res.bbsrc.ac.uk/pub/aar/ 
> 
> To join the asreml discussion list, send the message  
>      subscribe
> mailto:asreml-request@chiswick.anprod.CSIRO.au
> 
> To send messages to the list, mailto:asreml@chiswick.anprod.CSIRO.au
> 
> Asreml mailinglist archive: http://www.chiswick.anprod.csiro.au/lists/asreml
> 
>                         <> <> <> <> <> <> <>
> "Christ Jesus came into the world to save sinners"   I Timothy 1:15.
> <><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><><>
> 
> 
> **********************************
*  Mike F. Luo                   *
*  Animal & Poultry Science      * 
*  Unversity of Guelph           *
*  Guelph, ON, N1G 2W1           * 
*  Tel: (519)824-4120 X 8354     *         
*  Fax: (519)767-0573            * 
**********************************                                   
              

--
Asreml mailinglist archive: http://www.chiswick.anprod.csiro.au/lists/asreml