Effects of multivariate analysis

Dear Group,

I’m running multivariate analysis with 3 traits (T1, T2 and T3) for 107 genotypes in 5 locations. I want to test the effect of a regressor (p50, quantitative). For such I’ve used the following model in which I’ve fitted different VCOV for Tr.Loc.Gen.

5 Locs
3 Traits
p50 (quantitative) with different values for each genotype
107 Genotypes

T1 T2 T3 ~ Trait Tr.Loc Tr.p50 Tr.Loc.p50 !r Tr.Gen Tr.Loc.Gen !f mv

I’ve run the model but I do not know how to interpret the multivariate results in the .sln file (below).
1- When I look at estimations in the sln file for each level within a fixed term in the model, let’s say Tr.Loc.p50, these are the 5 rows that I see:
1.001
2.001
3.001
4.001
5.001

Nevertheless I cannot see the whole expansion for every Loc.p50 within each trait (5 levels like above x 3 traits = 15 in total). Let me know if I’m out of track but I would expect something like:
L1.1.001
L1.2.001
L1.3.001
L1.4.001
L1.5.001
L2.1.001
L2.2.001
L2.3.001
L2.4.001
L2.5.001
L3.1.001
L3.2.001
L3.3.001
L3.4.001
L3.5.001

2- Can I get this type of information somewhat from the sln file? Is Trait below the (general) intercept for each trait?

Many thanks in advance for any suggestion that can help me with this analysis.
Ruben

SLN FILE
  Tr.Loc.p50 1.001 0.000 0.000
  Tr.Loc.p50 2.001 -0.1478 0.1382
  Tr.Loc.p50 3.001 -0.2433 0.1382
  Tr.Loc.p50 4.001 -0.1865 0.1344
  Tr.Loc.p50 5.001 -0.1336 0.1691
  Tr.p50 1.001 0.2112 0.2037
  Tr.Loc 1.L1 0.000 0.000
  Tr.Loc 1.L2 -0.8493 0.9758E-01
  Tr.Loc 1.L3 -0.1247 0.8339E-01
  Tr.Loc 1.L4 1.001 0.9889E-01
  Tr.Loc 1.L5 -0.3933 0.1707
  Trait 1 20.40 2.533
  Trait 2 34.77 2.531
  Trait 3 49.01 2.543
  Tr.Gen 1.g1 -0.6254E-08 0.6923E-04
  Tr.Gen 1.g10 -0.4568E-08 0.6923E-04
  Tr.Gen 1.g100 0.2245E-08 0.6923E-04
  Tr.Gen 1.g101 0.7106E-09 0.6923E-04
  Tr.Gen 1.g102 -0.4988E-08 0.6923E-04
  Tr.Gen 1.g103 -0.9181E-09 0.6923E-04
  Tr.Gen 1.g104 0.000 0.6923E-04
  Tr.Gen 1.g105 0.8831E-08 0.6923E-04
  Tr.Gen 1.g106 0.7242E-09 0.6923E-04
  Tr.Gen 1.g107 0.1171E-07 0.6923E-04
[continue]

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Received on Tue Feb 09 2010 - 13:31:21 EST