ASReml 1.10 [15 May 2003] 21 Aug 2008 13:14:34.661 4096.00 Mbyte IBM *********************************************************** * Contact asreml@vsn-intl.com for licensing and support * * Use !{ and !} when fitting covariance across terms * * Be Wary! A structural change made to remove a limitation* * with PREDICT !PRESENT may have unintended side effects. * ***************************************************** ARG * Folder: ranim !P Reading pedigree file pedasreml.txt : skipping 0 lines PEDIGREE [pedasreml.txt ] has 1515 identities, 5040 Non zero elements Reading inv.giv skipping 0 header lines Inverse G structure of 1515 rows having 1134827 non zero cells read from inv.giv QUALIFIERS: !MVINCLUDE !MAXIT 600 Reading record0f2_asreml.txt FREE FORMAT skipping 0 lines Univariate analysis of logvie Using 505 records of 505 read Model term Size Type COL Minimum Mean Maximum #zero #miss 1 ranim 1515 Direct 1 418.0 1079. 1515. 0 0 2 logvie 1 Variate 2 2.600 2.848 3.153 0 0 3 sexe 2 Factor 3 1 1.7465 2 0 0 4 gen_prp 3 Factor 4 1 1.4693 3 0 0 5 rearing 2 Factor 5 1 1.2416 2 0 0 6 L_size 3 Factor 6 1 2.0079 3 0 0 7 prp_me 2 Factor 7 1 1.5545 2 0 0 8 saison_mise 16 Factor 8 1 7.8990 16 0 0 9 giv(ranim,1 1515 inv.giv 1 418 1079.4079 1515 0 0 331 identity 331 units in section 1; initial variance 0.14479E-02 111 identity 111 units in section 2; initial variance 0.31676E-02 63 identity 63 units in section 3; initial variance 0.52994E-02 1515 Ainverse 0.1000 Structure for ranim has 1515 levels defined 1515 inv.giv 0.1000 Structure for giv(ranim,1) has 1515 levels defined Forming 3056 equations: 26 dense. Initial updates will be shrunk by factor 0.041 NOTICE: 4 (more) singularities, 1 LogL= 446.700 S2= 1.0000 483 df : 5 components constrained 2 LogL= 684.885 S2= 1.0000 483 df : 5 components constrained 3 LogL= 1090.71 S2= 1.0000 483 df : 2 components constrained 4 LogL= 1049.23 S2= 1.0000 483 df Logliklihood decreased to 1049.23: Trying again with reduced updates 4 LogL= 1095.66 S2= 1.0000 483 df 5 LogL= 1099.96 S2= 1.0000 483 df 6 LogL= 1109.33 S2= 1.0000 483 df : 1 components constrained 7 LogL= 1113.30 S2= 1.0000 483 df : 1 components constrained 8 LogL= 1113.92 S2= 1.0000 483 df : 1 components constrained 9 LogL= 1113.93 S2= 1.0000 483 df 10 LogL= 1113.93 S2= 1.0000 483 df Source Model terms Gamma Component Comp/SE % C Residual 505 483 Variance 0 0 0.172330E-02 0.172330E-02 9.02 0 P Variance 0 0 0.542427E-02 0.542427E-02 6.69 0 P Variance 0 0 0.844562E-02 0.844562E-02 5.15 0 P ranim Ainverse 1515 0.298833E-06 0.298833E-06 0.00 0 B giv(ranim,1) inv.giv 1515 0.447098E-03 0.447098E-03 2.23 0 P Warning: Code B - fixed at a boundary (!GP) F - fixed by user ? - liable to change from P to B P - positive definite C - Constrained by user (!VCC) U - unbounded S - Singular Information matrix S means there is no information in the data for this parameter. Very small components with Comp/SE ratios of zero sometimes indicate poor scaling. Consider rescaling the design matrix in such cases. Analysis of Variance DF F-incr 4 gen_prp 3 118142.84 5 rearing 1 4.44 6 L_size 2 0.80 7 prp_me 1 14.78 8 saison_misebas 15 8.72 NOTICE: ASReml cannot yet determine the correct denominator DFs for these F statistics. They will not exceed the Residual DF which applies only if all components are KNOWN. Estimate Standard Error T-value T-prev 8 saison_misebas 2 -0.510582E-01 0.134113E-01 -3.81 3 -0.555961E-01 0.130237E-01 -4.27 -0.34 4 -0.475230E-01 0.230084E-01 -2.07 0.35 5 -0.133498E-01 0.203710E-01 -0.66 1.24 6 0.203262E-01 0.157297E-01 1.29 1.53 7 0.585973E-01 0.162617E-01 3.60 2.22 8 -0.603621E-01 0.127641E-01 -4.73 -8.23 9 0.904201E-02 0.159580E-01 0.57 4.83 10 -0.172724E-01 0.129994E-01 -1.33 -1.89 11 -0.402997E-01 0.144046E-01 -2.80 -1.93 12 -0.323979E-01 0.197862E-01 -1.64 0.39 13 -0.403446E-01 0.130312E-01 -3.10 -0.42 14 -0.635779E-02 0.138441E-01 -0.46 2.94 15 -0.133796E-01 0.145166E-01 -0.92 -0.55 16 -0.246453E-01 0.145611E-01 -1.69 -0.82 7 prp_me 18 0.117411E-01 0.533836E-02 2.20 6 L_size 20 -0.557443E-02 0.582948E-02 -0.96 21 -0.118821E-01 0.668178E-02 -1.78 -1.04 5 rearing 23 0.131440E-01 0.603190E-02 2.18 4 gen_prp 24 2.86569 0.114354E-01 250.60 25 2.89972 0.126742E-01 228.79 3.43 26 2.87647 0.157672E-01 182.43 -1.65 1 ranim 1515 effects fitted 9 giv(ranim,1) 1515 effects fitted SLOPES FOR LOG(ABS(RES)) on LOG(PV) for Section 1 9.17 2 possible outliers: see .res file SLOPES FOR LOG(ABS(RES)) on LOG(PV) for Section 2 18.85 SLOPES FOR LOG(ABS(RES)) on LOG(PV) for Section 3 19.30 Finished: 21 Aug 2008 13:27:23.459 LogL Converged