Random SNP effects

From: Denis Fidalis Mujibi <fmujibi_at_UALBERTA.CA>
Date: Mon, 7 Apr 2008 13:33:04 -0600

Dear ASRemlers

I was intending to run a random SNP model to estimate the variance of
total phenotypic variance accounted for by the SNP. For simplicity, I
would like to assume an IID structure for the SNP.
I was wondering if the following model definition captures this.

Trait ~ mu fixed_effects !r id snp1 !f contemp
0 0 1
id 2
1 0 US 0.4 !GP

Also would there be a way to make ASReml output the Sum of Squares in
the .asr file?

Thank you.

Denis Fidalis Mujibi
Ph. D. Candidate
Department of Agriculture, Food and Nutritional Science
4-10 AgroForestry Centre
University of Alberta, Edmonton
T6G2P5, AB, Canada.
Tel: 1-780-492-8865 (Lab)
Tel: 1-780-935-1443 (Cell)
Received on Wed Apr 07 2008 - 13:33:04 EST

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