probably a simple problem
[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
probably a simple problem
Hi,
I am wondering if anybody can help me as I seem to be in a bit over my head.
I want to analyse the results from a simple halfsib experiment. As there
have been quite a few deaths, my design has become decidedly unbalanced, and
I am getting some pretty strange estimates of variance components from
nested ANOVA. Hence my desire to estimate these components using REML and my
attempts to do this using ASREML.
When I try to run what I think is the right model, the .asr file comes up
empty. I am afraid my knowledge is not good enough to understand the section
on variance model specification (p 63 of the manual) well enough to know
what is going wrong. Is there something glaringly missing from the job file
below, that is leading to my inability to estimate the required variance
components?
analysing heritability of preference for orange
Sire 40
Dam 3
Por
fems.dat !skip1
Por ~ Sire Sire.Dam
I would appreciate if tremendously if anyone who has experience using ASREML
for these admittedly simple types of analysis could point me in the right
direction.
Best,
Rob Brooks
the data file reads as follows ....
Sire Dam Porrat
1 1 44.5735
1 1 6.4107
1 1 22.2091
1 2 -20.8564
1 2 1.5416
1 3 10.9015
1 3 15.0445
1 3 -6.5788
2 1 1.6636
2 1 -3.859
2 2 -11.3967
3 1 5.1621
3 1 7.175
3 2 -11.1277
3 2 -5.0704
4 1 -17.4001
4 1 11.4657
4 1 36.1717
4 2 -2.0037
4 2 1.0868
4 2 1.637
5 1 -3.0316
5 1 10.2467
5 1 -5.8703
5 2 -29.6844
5 2 -23.0784
5 3 -26.0299
5 3 -1.7053
5 3 -1.8409
5 3 -0.6111
6 1 -11.924
6 2 42.3723
6 3 0.5136
6 3 22.535
6 3 -0.913
7 1 -0.9246
7 1 -9.5542
7 2 -4.3142
7 2 11.6076
7 2 -3.9335
8 1 6.5577
8 1 30.737
8 1 -12.5591
8 2 8.8126
8 2 119.4371
8 2 9.3167
9 1 11.8285
10 1 19.9948
10 1 15.2075
10 2 9.2828
10 2 8.5817
10 2 52.7986
10 3 -2.4893
10 3 16.5198
11 1 1.4156
11 1 -2.6621
11 1 22.5151
12 1 -24.3116
12 1 2.1488
12 1 -0.0652
12 2 -4.129
12 2 17.2101
12 2 4.1773
12 2 8.0367
12 3 2.5877
12 3 -10.1071
12 3 7.84
12 3 1.7561
12 3 -14.3584
13 1 24.3138
13 1 1.0593
13 1 0.0356
13 2 5.3372
13 2 -11.9086
13 2 -0.7882
13 2 -2.5851
13 2 -15.5387
13 3 4.5484
13 3 7.3153
13 3 -4.266
13 3 0.188
14 1 12.9378
14 1 2.3645
14 1 4.0279
14 2 -16.1074
14 2 -2.3774
14 2 3.736
14 2 -19.6455
14 2 20.4372
14 3 2.6972
14 3 26.723
15 1 4.0378
15 1 1.5166
15 1 -3.1201
15 2 -7.3869
15 2 11.9428
15 2 -21.6588
15 2 15.9632
15 2 6.1063
16 1 -0.5416
16 1 8.4036
16 1 -2.6508
16 1 -0.299
17 1 2.5005
17 1 -9.8518
17 1 2.0667
17 2 15.8853
17 2 -2.9945
17 3 12.6257
17 3 6.8873
17 3 5.6477
17 3 -123.297
17 3 -2.7234
18 1 -4.7842
18 2 -3.9775
18 2 4.8671
18 2 -4.3124
19 1 0.1427
19 1 -29.466
19 1 9.4341
19 2 -10.2375
19 2 19.7973
19 2 16.455
19 3 -16.1218
19 3 32.3132
19 3 1.1914
19 3 -65.6163
19 3 22.4779
20 1 -13.279
20 1 1.8867
20 1 -3.0418
20 2 -5.5894
20 2 2.5076
20 2 -2.3257
20 3 11.2566
20 3 4.828
20 3 13.3823
20 3 16.0482
20 3 26.4014
21 1 1.8035
21 2 -5.4313
21 3 5.5358
21 3 -6.6502
22 1 54.8521
22 1 118.3873
22 1 8.0731
22 1 4.1987
22 2 3.6403
22 2 -8.299
22 2 8.821
22 3 4.7544
22 3 32.6256
22 3 -2.4608
23 1 1.4404
23 1 30.9742
23 1 -4.5507
23 2 -43.9794
23 3 13.8329
23 3 -2.3036
23 3 61.7479
23 3 41.3036
24 1 8.124
24 1 1.2719
24 1 -12.3608
24 2 11.8863
24 2 -3.3341
24 2 6.3773
24 3 -20.282
24 3 -13.257
24 3 22.3378
25 1 -0.4857
25 1 15.9944
25 1 13.1837
25 1 9.81
25 1 1.9643
25 2 3.096
25 2 22.4417
25 2 -8.6314
25 2 4.8287
25 2 19.3333
25 3 -3.2936
25 3 -7.8847
25 3 -50.4824
25 3 -40.3517
25 3 -33.215
26 1 15.9316
26 1 6.9945
26 1 6.6649
26 2 13.8214
27 1 -1.3179
27 1 5.3028
27 1 0.3963
27 2 0.9855
27 2 0.9645
27 2 9.3177
27 2 19.9782
27 2 -49.0543
27 3 1.1681
27 3 24.3195
28 1 10.8746
28 1 4.416
28 2 131.2346
28 2 5.6147
29 1 6.2925
29 1 -4.3113
29 1 0.2425
29 2 -0.4928
29 2 58.635
29 2 7.5116
29 2 24.3957
29 2 -22.9679
29 3 4.2287
29 3 18.5776
29 3 27.9356
29 3 -4.5073
29 3 -6.8459
30 1 15.8137
30 1 20.4531
30 1 8.2815
30 2 2.0037
30 2 0.1263
30 2 4.6614
30 3 -5.8915
30 3 21.2241
31 1 -10.1408
31 1 -15.316
31 2 9.6763
31 2 0.5417
31 2 14.0092
31 3 -5.5248
31 3 -4.417
31 3 11.5139
31 3 25.319
31 3 2.4507
32 1 8.6215
32 1 6.1447
32 1 -4.5403
32 2 -3.8242
32 2 35.1407
32 2 17.6143
32 2 -12.796
32 3 71.4174
32 3 2.7395
32 3 -1.3178
32 3 4.2247
32 3 10.7581
33 1 6.9669
33 1 5.7086
33 1 -3.6472
33 2 9.9896
33 2 14.9433
33 2 8.3549
33 2 1.8845
33 2 4.6299
34 1 -23.1473
34 1 -13.1995
34 1 7.4277
35 1 -5.6202
35 1 0.0916
35 1 2.0087
35 2 76.0304
35 2 47.2014
35 2 3.1605
35 2 1.7033
36 1 2.3524
36 1 9.2242
36 1 11.6172
36 2 -18.9728
36 2 -3.0581
36 2 26.4202
37 1 -88.3623
37 1 -128.114
37 1 -4.4696
37 2 16.4887
37 2 -45.1533
37 2 -4.4011
37 2 11.4478
38 1 -13.1027
38 1 2.6503
38 1 -0.6725
38 2 -16.8895
38 2 5.2587
38 2 11.2381
38 2 11.3792
38 2 -8.9231
39 1 9.348
39 2 -0.6452
39 2 -3.2773
39 2 24.1325
39 2 30.0941
39 2 6.7393
40 1 8.8106
40 1 5.3783
40 2 32.9456
40 2 15.3102
40 2 21.1975
40 2 -28.9519
40 2 -31.2262
40 2 -3.8874
___________________________
School of Tropical Biology
James Cook University
Townsville 4811
Queensland, Australia
ph: +61-7-4781-4485
fax: +61-7-4725-1570
--
Asreml mailinglist archive: http://www.chiswick.anprod.csiro.au/lists/asreml